Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| ACC | rs10031196 | chr4:30340411 | T/C | 1.94E-8 | 74 | 36.45 | 122.93 | 11.47 | KM Plot |
| ACC | rs1435796 | chr4:30309242 | C/A | 1.94E-8 | 74 | 36.45 | 122.93 | 11.47 | KM Plot |
| ACC | rs16883246 | chr4:30291536 | G/A | 1.94E-8 | 74 | 36.45 | 122.93 | 11.47 | KM Plot |
| ACC | rs6863036 | chr5:685666 | G/T | 9.54E-13 | 74 | 34.75 | 40.02 | 8.38 | KM Plot |
| ACC | rs76792431 | chr9:32344521 | A/T | 1.4E-5 | 74 | 36.83 | 15.58 | 40.13 | KM Plot |
| ACC | rs77427825 | chr4:30294136 | C/T | 1.94E-8 | 74 | 36.45 | 122.93 | 11.47 | KM Plot |
| ACC | rs78032239 | chr2:125075680 | G/A | 0 | 76 | 36.65 | 27.67 | 4.17 | KM Plot |
| BLCA | rs10059821 | chr5:151617492 | A/G | 7.63E-6 | 216 | 4.07 | 12.67 | 8.47 | KM Plot |
| BLCA | rs10101830 | chr8:23797075 | A/G | 4.55E-5 | 216 | 5.13 | 7.42 | 9.47 | KM Plot |
| BLCA | rs10113990 | chr9:23231298 | A/G | 7.51E-6 | 216 | 9.63 | 9.25 | 2.03 | KM Plot |
| BLCA | rs10139707 | chr14:101761459 | G/T | 2.62E-10 | 213 | 1.47 | 9.07 | 10.12 | KM Plot |
| BLCA | rs10161665 | chr13:48049494 | C/G | 2.79E-8 | 216 | 2.7 | 13.57 | 8.95 | KM Plot |
| BLCA | rs10220965 | chr16:11704580 | C/T | 7.74E-5 | 205 | 4.73 | 11.7 | 9.1 | KM Plot |
| BLCA | rs10503799 | chr8:26605624 | A/G | 0 | 216 | 2.07 | 7.33 | 10.1 | KM Plot |
| BLCA | rs10504092 | chr8:50777948 | G/T | 2.43E-5 | 216 | 10.53 | 9.05 | 1.87 | KM Plot |